International Commission for the Taxonomy of Fungi (ICTF)
International Union of Microbiological Societies (IUMS, Mycology Division)

Tricho BLAST

Here we apply the open source nucleotide-nucleotide BLAST (blastn) program available on NCBI to the local Multiloci Database of Phylogenetic Markers which includes only vouchered entries. The current version of the database contains the library in total of more than 600 fragments of five markers (ITS1 and 2, two introns and one exon of tef1 gene and a portion of rpb2 exon gene) for 87 genetically characterized species of Hypocrea and Trichoderma:

The distribution of markers on the species list available here: Markers Distributon
Important: it is recommended to use the Marker Distributor for the interpretation of any BLAST result!
Important: If one or several mostly similar BLAST hits will be marked as: (NOTE #X), check the corresponding NOTE

Choose program to use and database to search:
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The query sequence is filtered for low complexity regions by default.
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Copyright: Irina Druzhinina & Alexey Kopchinskiy 2004 - 2008